Hands-on bioinformatics demos
Two guided analyses on public data. Pick samples, run each step, change the parameters and see what moves. Heavy steps were computed ahead of time; the rest runs live. Works on a phone.
16S amplicon
Oral microbiome, reads to species
FASTQ, primer trimming and MultiQC, DADA2 with three parameter sets, taxonomy, alpha and beta diversity, and differential abundance with MaAsLin 3 on your own selection.
Open the 16S demo → Single-cell RNA-seqOral cancer, count matrix to pathways
Cell filtering, dimension reduction and UMAP, Leiden clustering at three resolutions, cell-type checks with markers and CellTypist, then pseudobulk DESeq2 and GSEA.
Open the scRNA-seq demo →